Index

A

agg_by_obs_and_bin() (in module fiber_views.tools)

annotate_boundaries() (in module fiber_views.plot)

B

bed_to_anno_df() (in module fiber_views.fiber_views) bin_sparse_regions() (in module fiber_views.tools) build_anno_df() (fiber_views.utils.ReadList method) build_mod_array() (fiber_views.utils.ReadList method)

build_mod_array_from_def() (fiber_views.utils.ReadList method) build_multi_fview() (in module fiber_views.fiber_views) build_seq_array() (fiber_views.utils.ReadList method) build_single_fview() (in module fiber_views.fiber_views) build_sparse_region_array() (fiber_views.utils.ReadList method)

C

calc_kmer_dist() (in module fiber_views.tools)

count_kmers() (in module fiber_views.tools)

D

draw_fiber_bars() (in module fiber_views.plot) draw_fiber_lines() (in module fiber_views.plot) draw_mods() (in module fiber_views.plot)

draw_mods_offset() (in module fiber_views.plot) draw_regions() (in module fiber_views.plot) draw_split_lines() (in module fiber_views.plot)

F

fiber_views module, [1] fiber_views.fiber_views module fiber_views.plot module

fiber_views.tools module fiber_views.utils module filter_by_end_meth() (fiber_views.utils.ReadList method) filter_by_window() (fiber_views.utils.ReadList method) filter_regions() (in module fiber_views.tools)

G

get_mod_pos_from_rec() (in module fiber_views.utils) get_reads() (fiber_views.utils.ReadList method) get_seq_records() (in module fiber_views.tools)

get_sequences() (in module fiber_views.tools) get_strand_correct_mods() (in module fiber_views.utils) get_strand_correct_mods_from_def() (in module fiber_views.utils) get_strand_correct_regions() (in module fiber_views.utils)

M

make_dense_regions() (in module fiber_views.tools) make_plot_ax() (in module fiber_views.plot) make_region_df() (in module fiber_views.tools) make_sparse_regions() (in module fiber_views.utils) mark_cpg_sites() (in module fiber_views.tools)

module fiber_views, [1] fiber_views.fiber_views fiber_views.plot fiber_views.tools fiber_views.utils

P

print_aligned_centers() (fiber_views.utils.ReadList method)

print_mod_contexts() (in module fiber_views.utils)

R

read_bed() (in module fiber_views.fiber_views)

ReadList (class in fiber_views.utils)

S

split_fire() (in module fiber_views.tools)

strand (fiber_views.utils.ReadList attribute)